Genomics & Python
Course Index
33 Lessons · 3 Levels
End-to-end genomics pipelines in Python — WGS/WES variant calling, RNA-seq, scRNA-seq Scanpy, GWAS, polygenic risk scores, pangenomics, and Snakemake automation. Covers AWS HealthOmics, India GenomeIndia, NHS WGS, population genomics & 4 real builds.
33Lessons
3Levels
4Projects
FreeAccess
Level IPython Foundations & Genome Data FormatsLessons 1–10
LESSON 01
Genomics & Python: Global Overview
LESSON 02
Human Genome & Reference Assemblies
LESSON 03
Python Setup for Genomics
LESSON 04
Biopython: Sequences & GenBank
LESSON 05
NCBI Entrez API with Python
LESSON 06
FASTA & FASTQ Processing
LESSON 07
BLAST & Sequence Alignment
LESSON 08
VCF Parsing & Variant Annotation
LESSON 09
BED & GFF Genome Annotations
LESSON 10
pysam: BAM File Processing
Level IISequencing Pipelines & Genomic AnalysisLessons 11–22
LESSON 11
WGS: Whole Genome Sequencing
LESSON 12
WES: Whole Exome Sequencing
LESSON 13
De Novo Genome Assembly
LESSON 14
RNA-seq with Python & DESeq2
LESSON 15
scRNA-seq Analysis with Scanpy
LESSON 16
Epigenomics: ChIP-seq & ATAC-seq
LESSON 17
GWAS: Genome-Wide Association
LESSON 18
Polygenic Risk Scores
LESSON 19
Population Genomics & Ancestry
LESSON 20
Pangenomics & Graph Genomes
LESSON 21
Metagenomics with Python
LESSON 22
Genomic Data Visualization
Level IIICloud, ML & ProjectsLessons 23–33
LESSON 23
TCGA, GEO & gnomAD Databases
LESSON 24
AWS HealthOmics & Cloud Genomics
LESSON 25
Snakemake Genomics Pipelines
LESSON 26
Precision Med & Pharmacogenomics
LESSON 27
India GenomeIndia & Global Data
LESSON 28
ML for Genomic Prediction
LESSON 29
AlphaFold & Protein Language Models
LESSON 30
Build a WGS Variant Pipeline
LESSON 31
Build an RNA-seq Pipeline
LESSON 32
Build a GWAS Analysis Tool
LESSON 33
Build Population Genomics Dashboard