Bioinformatics
Course Index
33 Lessons · 3 Levels
Production bioinformatics pipelines in Python — Biopython, NGS workflows, GATK variant calling, RNA-seq DESeq2, scRNA-seq Scanpy, and AlphaFold protein prediction. Covers Snakemake/Nextflow automation, AWS HealthOmics, GenomeIndia, NHS WGS & 4 real genomics builds.
33Lessons
3Levels
4Projects
FreeAccess
Level IFoundations, Sequences & NGS SetupLessons 1–10
LESSON 01
Bioinformatics: Global Overview
LESSON 02
DNA, RNA & Protein Sequences
LESSON 03
Python & Biopython Essentials
LESSON 04
FASTA, FASTQ & GenBank Parsing
LESSON 05
BLAST & Pairwise Alignment
LESSON 06
Multiple Sequence Alignment
LESSON 07
NCBI & UniProt API Queries
LESSON 08
Linux & Bash for Bioinformatics
LESSON 09
NGS & Illumina Sequencing
LESSON 10
FastQC & Trimmomatic QC
Level IINGS Pipelines, Variant Calling & Omics AnalysisLessons 11–22
LESSON 11
Read Alignment: BWA & STAR
LESSON 12
SAM/BAM: samtools & pysam
LESSON 13
Variant Calling: GATK & bcftools
LESSON 14
VCF Parsing & Annotation
LESSON 15
RNA-seq Gene Expression Analysis
LESSON 16
DESeq2 & edgeR: Diff Expression
LESSON 17
scRNA-seq: Scanpy & Seurat
LESSON 18
ChIP-seq & ATAC-seq Analysis
LESSON 19
GWAS: Genome-Wide Association
LESSON 20
Pathway & Gene Ontology Enrichment
LESSON 21
AlphaFold & PyMOL Structures
LESSON 22
Proteomics Data Analysis
Level IIIAdvanced Topics, Cloud & ProjectsLessons 23–33
LESSON 23
Phylogenetics & Evolutionary Trees
LESSON 24
Metagenomics & Microbiome Analysis
LESSON 25
Snakemake & Nextflow Pipelines
LESSON 26
Docker & Singularity Containers
LESSON 27
Cloud HPC: AWS & GCP Genomics
LESSON 28
Machine Learning for Genomics
LESSON 29
TCGA, GEO & GTEx Databases
LESSON 30
Build a Variant Calling Pipeline
LESSON 31
Build an RNA-seq Pipeline
LESSON 32
Build a scRNA-seq Clustering Tool
LESSON 33
Build a Protein Structure Predictor